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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.B082X | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 131aa MW: 14682.9 Da PI: 6.8652 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2.1e-06 | 27 | 38 | 15 | 26 |
-TTTTT-SS-SS CS zf-CCCH 15 CkyGdrCkFaHg 26 C yG+rCkF+H+ Araip.B082X 27 CDYGERCKFIHS 38 ***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 25 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 5.13E-7 | 36 | 104 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 2.4E-6 | 37 | 102 | IPR015943 | WD40/YVTN repeat-like-containing domain |
PROSITE profile | PS50294 | 8.571 | 51 | 92 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 8.503 | 51 | 92 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MPLQRGAMAV VEVIIEQLGR LIKYENCDYG ERCKFIHSWS CGDSFSLLTQ LEGHTKVVSG 60 IALPSGFDKL YTTCINETLR VWGYQSRQCT ADINVGGEVG CMINEGPWIF VGIPNCTRVQ 120 DQPCTLHRCH K |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.B082X |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941375.1 | 4e-51 | zinc finger CCCH domain-containing protein 48 | ||||
Refseq | XP_025620179.1 | 4e-51 | zinc finger CCCH domain-containing protein 48-like | ||||
Swissprot | Q9FNZ2 | 1e-37 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A445BFX1 | 9e-50 | A0A445BFX1_ARAHY; Uncharacterized protein | ||||
STRING | XP_004513686.1 | 8e-42 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14636 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 5e-40 | zinc finger WD40 repeat protein 1 |