![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.AV6R9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 180aa MW: 20542.8 Da PI: 6.504 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.7 | 2e-23 | 84 | 171 | 2 | 88 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +Y +YAk+vGF vrk + ++g+ t+r+f C+k g+ree+ + ++++r+++aetrtgC+akl + +++ +++w+v kl++eHnHe Araip.AV6R9 84 CYVSYAKSVGFGVRKGDAARG-KDGNYTRRRFFCNKAGYREEKYYNnSNRKREHKAETRTGCEAKLSIYLDEsSSVWRVRKLVEEHNHE 171 7****************9998.7888***************99887577888899***************999***************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.1E-22 | 84 | 171 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MTKTKYIVVS GDRRVISFQQ LLEMDIEGEA TYFESDEGGQ NMNETLENVS CTCACCGSSR 60 YCGVLTIEDI RNHSWMTADA AYECYVSYAK SVGFGVRKGD AARGKDGNYT RRRFFCNKAG 120 YREEKYYNNS NRKREHKAET RTGCEAKLSI YLDESSSVWR VRKLVEEHNH EEDLGLGKGD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.AV6R9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016164159.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025640824.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025664409.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025693546.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444YDB3 | 5e-95 | A0A444YDB3_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF29551 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 7e-14 | FAR1 family protein |