PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AU5HG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 411aa    MW: 46941.9 Da    PI: 7.7204
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AU5HGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11.1e-1651137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+++ +++++   ++i+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.AU5HG  51 KFYRNYAKAAGFSTKVWRTNRK--GNKIKNQLITCSREEKWKSKISP---TEKTNPTASLNCSARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6**************9987776..777999*********99998776...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1351137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDDSSSDCQL NQGEVDYEFE SNEVPEPLSV VDDQFVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTKVWRTN RKGNKIKNQL ITCSREEKWK SKISPTEKTN PTASLNCSAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAGMRSTQR SESMHSFFNK  180
FITRNSSLIQ EQAERESDAA DFHTVIPCAT KSSIEAQFQD VYTHQKFREV QAQFRGKANC  240
ITRLTNSALG YSVYEVGEQV SSSIFNKFVV TYDSVAAEVK FQCLLFESRG ILCCHALSVL  300
SFERVSQVSP RYILERWSKK VKRQHTHIKS SHDEPLLDPR SKRFDQLVFR SQNICEFASE  360
SEELTAILHR AYDNVMAEME SLKAKRKGTS SLSHEDANLE SINELQSPPR I
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.AU5HG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-166protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444ZYV40.0A0A444ZYV4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-20FAR1 family protein