PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.ATU0E | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 329aa MW: 38343.5 Da PI: 5.6862 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.7 | 7.1e-14 | 20 | 61 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+n++ r+++f +R+ gi+KK + S LC +e+++i+++ + Araip.ATU0E 20 CIKNERERKISFMQRKDGIMKKISTFSKLCKVEACLIVYGDD 61 69**************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.11 | 11 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.2E-9 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-16 | 11 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-12 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MDIFLNQRFS MGRGKTVYEC IKNERERKIS FMQRKDGIMK KISTFSKLCK VEACLIVYGD 60 DSSRPMTWPQ EHSKVQSIIK KYEVQKNNET HPIIFDEEEF FKNKKIMIEA EISKLRKKVF 120 KLKYPTMDPI FTTLDGNQLM EFIALVNTKI KACKKRIDML KESNQDNGSN FNVDQNQSQL 180 NFMNNISNHD YALHHDNLVY QTQNPKFDPN VTYFVAKNNG MIMDSISQVN VSLDCSTTNQ 240 VAIMNSKEKN VIVDSTNQIS EDGDLINWDD FVEVENWIDQ LQYETDLKEI LSHQSQNVPQ 300 SSQILPPITM DGFLADEKNN DHQFQPFNM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.ATU0E |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016186302.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A445E7K0 | 0.0 | A0A445E7K0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G22700.1 | 2e-47 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 4e-15 | AGAMOUS-like 46 |