PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.ARR4J | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21043.6 Da PI: 6.6503 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 168.3 | 5.2e-52 | 10 | 164 | 2 | 167 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvv.tvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +vf+ +e++CyvqC+ C+ il+vsvP ts+++ v vrCGhCt++lsvn+ k s l + + s + ++ + +k ++ n++ n+ e+a+++v++ Araip.ARR4J 10 HVFDVPEEICYVQCGLCSSILVVSVPCTSMSMAVlSVRCGHCTTVLSVNMFKPSFLPSLVTP---SNQLNIEDGNKISTLNTHNNYNDCEEANNDVTT 104 7899*************************9875538*************9988765444432...334445555555555555555555555555544 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 +++++p ++PPek+qr Psayn+fikeei+r+ka+nP+++h+eafs+aaknWa fP+ Araip.ARR4J 105 PF----TTDSAP-----NKPPEKKQRTPSAYNCFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPSE 164 22....233333.....8************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-53 | 15 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.24E-10 | 109 | 181 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.9E-7 | 114 | 180 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 9.216 | 119 | 187 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 7.41E-6 | 121 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSSSRRLVRH VFDVPEEICY VQCGLCSSIL VVSVPCTSMS MAVLSVRCGH CTTVLSVNMF 60 KPSFLPSLVT PSNQLNIEDG NKISTLNTHN NYNDCEEANN DVTTPFTTDS APNKPPEKKQ 120 RTPSAYNCFI KEEIKRLKAE NPEMAHKEAF STAAKNWANF PPSEYRRGDD EIDQDRSTHT 180 PQLANNNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.ARR4J |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016192869.1 | 1e-140 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 3e-52 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A444ZVA7 | 1e-138 | A0A444ZVA7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G10125.1 | 1e-63 | (Glycine max) | ||||
STRING | XP_007157432.1 | 1e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-54 | YABBY family protein |
Publications ? help Back to Top | |||
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