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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.AKR06 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25400.1 Da PI: 9.8581 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+tae+Aa+a++aa+++++g Araip.AKR06 24 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAARAYDAAAREFRG 73 69*******.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-22 | 24 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.9E-40 | 24 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 24 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.828 | 24 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-17 | 24 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 24 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAPRDKTAAV KVNGKGSAGV KEVHFRGVRK RPWGRYAAEI RDPGKKSRVW LGTFDTAEDA 60 ARAYDAAARE FRGPKAKTNF PFPDSDDNNN NNIVVVKNNN RSPSQSSTVE SSSRDRDSYS 120 AAATAAADSS PLDLNLAPAG AGFSGSIRFP FQQPFAVFPC RMPAAKQALY LDAVLRAGMV 180 GHGQFGFGYN RPAAAGAQSD SDSSSVIDLN QHDRDVAKNN GRGLVLDLNE PPPQEMA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 21 | 82 | 2 | 64 | ATERF1 |
3gcc_A | 3e-21 | 21 | 82 | 2 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.AKR06 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | SHU91857 | 0.0 | U91857.1 Stylosanthes hamata ethylene-responsive element binding protein homolog gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016181103.1 | 1e-173 | ethylene-responsive transcription factor 4 | ||||
Refseq | XP_025681697.1 | 1e-173 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A444WYI8 | 1e-172 | A0A444WYI8_ARAHY; Uncharacterized protein | ||||
STRING | XP_007148134.1 | 4e-74 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-27 | erf domain protein 9 |