PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.AK8SS | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 687aa MW: 77682.1 Da PI: 5.1923 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.0006 | 496 | 527 | 20 | 55 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f L++ +P++ ++K++iL +++Y+k+L+ Araip.AK8SS 496 FKILKSSIPHP----ISEVEKISILGDTIKYLKELE 527 78899999999....789***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.3E-45 | 16 | 226 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Gene3D | G3DSA:4.10.280.10 | 1.9E-6 | 489 | 545 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-5 | 495 | 540 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence Send to blast |
MASSWSPKHE KMQKSLSTQL AVAVRSVQWS YGIFWAPSTT QEGVLEWREG YYNGDIKTMK 60 TVQTTMEIKN DKIGVQRSEQ LKELYKFLLV GESDPQTKRP SAALSPEDLS DSEWYYLVCM 120 SFVFYPNQSL PGRALEIGET IWLCNAQYAD SKVFSRSLLA KSASIQQKEI LSDYYIVAVT 180 KISMFILCFK PVFQTVVCFP YLGGVIEIGT TELVLEDPNL IQHVKACLLE FSKPICSDKS 240 SSALNKPDDD KLQPCSNGEH VLVDTKVLEY SCSPAEEIKL DQDPIKELQQ DSNMDSPDGC 300 SNGCEHNCRV GESMVEGINN GGPSSQVHFM DDDDALSNGA PDSLSSCDCI SEASENRGKA 360 SKDVQLIRGI QSFNHLNRSS LDAEATDEHL SYTRILSALL GRSSAFKQNP YASNSNCKSS 420 FVKWKKGGIC EQNRLRLEQS LLKKTLFTVP LMHRSFSSIE SMKENETKEW TNRLENADDK 480 FRENVLSDKI RETGNFKILK SSIPHPISEV EKISILGDTI KYLKELETRV EELESYMDMS 540 DSEARTKRKC PDMLEQISDN YGARKVYNKG MRKPWMMNKR KACDIDEKDR EEIDRFVVSE 600 EDNNKPLDVK VNMKEQEVLI EMKCPYREYI LHDIMDAINN LHLDAHSVES STTEGVLTLT 660 LKSKFRGTAT APLGMIKEAL WKVSGNL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.AK8SS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020970201.1 | 0.0 | transcription factor EGL1 isoform X1 | ||||
Refseq | XP_025631364.1 | 0.0 | transcription factor EGL1 isoform X1 | ||||
TrEMBL | A0A445ABX2 | 0.0 | A0A445ABX2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G07740.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 1e-118 | bHLH family protein |