PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A522U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 256aa    MW: 29026 Da    PI: 4.6689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A522UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.6e-06124163454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h ++Er+RR++i ++f  L  l+            K+++Le A++Y+k+L
  Araip.A522U 124 DHIIAERKRREKISQSFIALAALID-----------KVTVLENAIKYVKDL 163
                  699******************9994...........668999999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-11118182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9121182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-8125167No hitNo description
SMARTSM003536.3E-7126169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MESSSPSWLH DLEMEDDYNN FFPKEYSMNN SIDDYDEDLF FAHDIGNSIM FESPSNNNNY  60
SSVDETSFDD ERPSKFLKTS TNNYTTLNTK TKLKEVVNGS SKNQNLVTKS SSNGSKRSPS  120
NAQDHIIAER KRREKISQSF IALAALIDKV TVLENAIKYV KDLKTRLTTL EQENNEKIKE  180
IAEEPSVIVL NKRSPHDNES DDESVIVDDA SNHDSSSLLH QVEARVSGQQ MGEGYNLTVK  240
ELVKSIRVET LKFILS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERKRRE
2129134RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A522U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015961139.11e-136transcription factor bHLH18 isoform X2
TrEMBLA0A445ESH91e-135A0A445ESH9_ARAHY; Uncharacterized protein
STRINGGLYMA17G16720.12e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2928122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-12bHLH family protein