PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.A49CU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26367.4 Da PI: 8.337 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.6e-08 | 14 | 42 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+W+++Ed++l+d+++++G +W+t ++ Araip.A49CU 14 KGAWSKQEDQKLIDYINKHGDVCWRTLPQ 42 79******************99***9876 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 48 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ Araip.A49CU 48 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 92 8999******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-8 | 6 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-17 | 11 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 51 | 13 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-6 | 14 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.682 | 43 | 97 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-22 | 44 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-15 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-15 | 48 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-10 | 50 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRKPCCETNK DMNKGAWSKQ EDQKLIDYIN KHGDVCWRTL PQAADLKRGN FAEDEEDLII 60 KLHALLGNRW SLIAGRLPGR TDNEVKNYWN SHIRRKLISK GIDPNNHRLI TQKNLIPTPP 120 ISDCSNSSSS GLLKKKNKNN DEATTNKSNN IHNYSYHQVV SSEEDESNNN NNNNKGLLLP 180 DLNLDLTISI PSSSSSAENN DLKPTTIHHE SNSSGRERNL MMAGNSPPTL LLFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 11 | 97 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.A49CU |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP238116 | 1e-63 | KP238116.1 Lablab purpureus MYB-like 2 protein (myb-like2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016196581.1 | 1e-136 | transcription factor MYB8-like | ||||
Refseq | XP_025647025.1 | 1e-136 | transcription factor MYB8 | ||||
Swissprot | Q9S9K9 | 3e-55 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A444ZJG4 | 1e-134 | A0A444ZJG4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G33960.1 | 1e-80 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23360 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 7e-57 | myb domain protein 3 |