![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.A1JC7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 169aa MW: 18724.9 Da PI: 10.9018 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.1 | 1.9e-08 | 123 | 155 | 1 | 33 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee 33 +ke +r +r+ +NR++A+ R+RKk ++ Le Araip.A1JC7 123 DKEYRRLKRLLRNRVSAQQARERKKVYVNDLES 155 58999*************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00170 | 4.4E-7 | 124 | 155 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.15E-8 | 126 | 155 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-8 | 127 | 155 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 130 | 145 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MSLPRATTVG NNSPNNNTLQ QQLMNNEGGV AAAPSSSSSS WNRIINNNNN IRNSVNPIPP 60 QKRSKLEDSD EDLFTVPDVE TMLSVHSTAT NTNSGNVDQS NAIDSQLQAA VAGKRRRGRN 120 PVDKEYRRLK RLLRNRVSAQ QARERKKVYV NDLESISLSL FPSVNIILL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes. {ECO:0000269|PubMed:12023303}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.A1JC7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT149413 | 5e-37 | BT149413.1 Lotus japonicus clone JCVI-FLLj-7I22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016198275.1 | 1e-108 | transcription factor HY5-like | ||||
Refseq | XP_025647034.1 | 1e-108 | uncharacterized protein LOC112742032 isoform X5 | ||||
Swissprot | Q8W191 | 2e-25 | HYH_ARATH; Transcription factor HY5-like | ||||
TrEMBL | A0A444ZJT8 | 1e-107 | A0A444ZJT8_ARAHY; Uncharacterized protein | ||||
STRING | XP_004514285.1 | 3e-48 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12640 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G17609.2 | 2e-27 | HY5-homolog |