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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.A0U1L | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bZIP | ||||||||
Protein Properties | Length: 159aa MW: 17517.6 Da PI: 5.1257 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 61.5 | 1.7e-19 | 78 | 139 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e++lkr++rkq+NRe+ArrsR+RK+ae+e L++kv+ L +e ++L++el++ ++e++kl++e+ Araip.A0U1L 78 ERDLKRQKRKQSNRESARRSRLRKQAECEDLQKKVE-LGNESQTLREELQRVSEECEKLTAEN 139 799********************************6.999999*****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-15 | 73 | 136 | No hit | No description |
Pfam | PF00170 | 2.4E-16 | 78 | 139 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.1E-17 | 78 | 141 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.174 | 80 | 142 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.19E-7 | 81 | 136 | No hit | No description |
CDD | cd14702 | 9.86E-16 | 83 | 132 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 85 | 100 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MLADGANAQN NAITQSSGKA AVSMAATNLN IGMDLWNASS AEADAPKLRN NQPAPGAVNP 60 PTIMGCEVAL GEQWIQDERD LKRQKRKQSN RESARRSRLR KQAECEDLQK KVELGNESQT 120 LREELQRVSE ECEKLTAENN SIKEKLERLC GPEAVASLE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | RRSRLRK |
2 | 94 | 101 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.A0U1L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025661377.1 | 1e-111 | G-box-binding factor 1-like | ||||
Swissprot | P42774 | 5e-40 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A444YMW1 | 1e-106 | A0A444YMW1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G06960.2 | 1e-75 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20930 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.2 | 2e-42 | G-box binding factor 1 |