PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A0RJX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 615aa    MW: 70691.4 Da    PI: 7.5444
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A0RJXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.31.9e-2174165191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg r+ +  + ++++r+ r+ trt+C a+l+vk+++  g+w+v+ +++ HnH+l+p
  Araip.A0RJX  74 QFYNAYSCWHGFVMRKDDVVRD-NQGRIISRQLVCNKEGWRNMRYLDmDDRSREARSLTRTKCPARLRVKLDYgYGRWKVSCFVESHNHDLTP 165
                  6****************99998.8888***************9998867889999******************9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1974165IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.052279315IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-5290317IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.104.2E-4357364IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.104.2E-4426446IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MSIKEDDVKN DSDNDLGDDF DYQPNAEDDA DDDDVDSLDS TSKSEEVCGV KRIADLMVED  60
IWNLEFRTED EACQFYNAYS CWHGFVMRKD DVVRDNQGRI ISRQLVCNKE GWRNMRYLDM  120
DDRSREARSL TRTKCPARLR VKLDYGYGRW KVSCFVESHN HDLTPPQFAH LIPANCRLTV  180
TDRVQNTLID FMHNLDRALK EYRNNELIAD FKSQCSEPVM ITSLEVYERS ASCYFTRNIF  240
KEIRYEIQRA GALNITVLSI TLDKVEFSVT ALGDPAKDRR VEVDRGKNLF SCSCKLFESR  300
GIPCSHIFCA MKFENILEFP DSMIYKRWTK NAKNEFISTE MPVNDDIERV LKFRVGALAS  360
NCNKLCDIAC KDLADFDEVQ SELVNLVIRL QSRKQGKSTP NVNVEGINNP FVVKSKGAPS  420
KRSSWRKKRA CSNCHKYSHY YKRCPDLMQH SVEGNPRDRS YDNASAKDSG FSPERFANSS  480
RSFSIKFEHH SGPNTKPFKK GGTRKLTATG MRNRKGKDNT FVERSLHESS ESIDIASTNG  540
VFNKNLYSLT QHVKESQQDK RHSFTNYECV NDVIDDKCDT RHVQIDVRDP LPSSLPCGNK  600
QGSYMALFAS MHRTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A0RJX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025616892.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A445BN500.0A0A445BN50_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-18FAR1-related sequence 5