PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.9X5LK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | YABBY | ||||||||
Protein Properties | Length: 175aa MW: 19715.2 Da PI: 6.5779 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 168.1 | 6e-52 | 2 | 143 | 20 | 166 |
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113 t++ vsvP +s+++vvtvrCGhCtsllsvn++kas +lla+ s ++ ++ ++ + +n+ +n +++ +++ s+ +e+v+ + Araip.9X5LK 2 TMMQVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASfvplHLLASLST------HHHHHSKEEDANNIATNSSSSIMMMNYSSN-D---CAEEDVTTIN 89 899****************************9998444444444443......233333344445555555544444444444.2...2333444444 PP YABBY 114 p.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 + v++PPekrqr Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP+ Araip.9X5LK 90 NvVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPT 143 4399************************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.2E-53 | 2 | 144 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.03E-10 | 89 | 143 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.5E-7 | 94 | 144 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MTMMQVSVPC SSMSMVVTVR CGHCTSLLSV NMMKASFVPL HLLASLSTHH HHHSKEEDAN 60 NIATNSSSSI MMMNYSSNDC AEEDVTTINN VVNKPPEKRQ RTPSAYNRFI KEEIKRLKAE 120 NPEMAHKEAF STAAKNWANF PPTQLNGDEE ICNQKEQFAD LDSQVDRHSH SHELI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.9X5LK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016200725.1 | 1e-119 | axial regulator YABBY 4 | ||||
Refseq | XP_025650841.1 | 1e-119 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 9e-49 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A444Z6X5 | 1e-127 | A0A444Z6X5_ARAHY; Uncharacterized protein | ||||
STRING | AES96167 | 1e-81 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-40 | YABBY family protein |
Publications ? help Back to Top | |||
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