PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9MG9F

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 321aa MW: 36644.9 Da PI: 7.6919

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9MG9F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.3	3.8e-33	85	226	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + +W+ Araip.9MG9F 85 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPENLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVNsdeegnETRWH 180 799*********9.99*99984443333333222333336******.555555677**************844455444788 PP NAM 85 atgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +tgk+++v+ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Araip.9MG9F 181 KTGKTRPVYI-RGKLKGYKKILVLYtnyGGKQRKPEKTNWVMHQYHL 226 ********.999*******66658999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-37	81	245	IPR003441	NAC domain
PROSITE profile	PS51005	32.65	85	245	IPR003441	NAC domain
Pfam	PF02365	2.3E-15	86	226	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MTECNEHENN HGNIIVEGRK DSLIRTCPTC GHHIKCQDQC NEHENNHGNI IVEGRKDSLI 60 RTCPTCGHHI KCQDQGGGLH DLPGLPAGVK FDPTDQEILE HLEAKVRSDI HKLHPLIDEF 120 IPTLEGENGI CYTHPENLPG VSKDGLIRHF FHRPSKAYTT GTRKRRKVNS DEEGNETRWH 180 KTGKTRPVYI RGKLKGYKKI LVLYTNYGGK QRKPEKTNWV MHQYHLGNDE EEKEGELVVS 240 KVFYQTHPRQ CSSLLVNNNK DSSTTLVKGN NNNGFVEYYH SNFISFDQGE HQHRSSGAQV 300 VISHFPLHEA APNYHSLNQK E

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9MG9F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016193277.1	0.0	NAC domain-containing protein 73 isoform X1
Refseq	XP_020974107.1	0.0	NAC domain-containing protein 73 isoform X2
Refseq	XP_025643557.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-108	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A445A4S8	0.0	A0A445A4S8_ARAHY; Uncharacterized protein
STRING	XP_007132767.1	1e-167	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-111	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]