PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.9K8N0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 705aa MW: 77001 Da PI: 6.1318 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.7 | 4.3e-25 | 89 | 211 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......................................rergferspkqCkekwenlnkr 60 rW++qe+laL+++r++m+ ++r+++ k+plWeevs++ +e g++r++k+Ckek+en+ k+ Araip.9K8N0 89 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSSYSlisnvvyvyslsyasipsilalvnlgglilmnelirklAELGYKRNAKKCKEKFENVYKY 186 8************************************************************************************************* PP trihelix 61 ykkikegekkrtsessstcpyfdqlea 87 +k++k+g++++++++ t+++fdqlea Araip.9K8N0 187 HKRTKDGRSGKSEGK--TYRFFDQLEA 211 *********975544..6*******85 PP | |||||||
2 | trihelix | 106.2 | 2.2e-33 | 525 | 610 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s+ m+++g++r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a Araip.9K8N0 525 RWPKAEVEALINLRTSLDAKYQENGPKGPLWEEISALMKKHGYNRNAKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLDA 610 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 57 | 86 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.59E-18 | 88 | 191 | No hit | No description |
PROSITE profile | PS50090 | 3.95 | 88 | 184 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.9E-8 | 160 | 212 | No hit | No description |
SMART | SM00717 | 4.6E-4 | 522 | 584 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.2E-23 | 524 | 611 | No hit | No description |
CDD | cd12203 | 6.92E-29 | 524 | 589 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-5 | 524 | 581 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.317 | 524 | 582 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MLGDSAVLGT GGGSSGGADA VVATAATSSV AAAVATASAP LPPPLLSTAP HHHHDGAVEM 60 GGGGGGGGGG GGSTSGDDEK GERSFGGNRW PRQETLALLK IRSDMDVAFR DASVKGPLWE 120 EVSSYSLISN VVYVYSLSYA SIPSILALVN LGGLILMNEL IRKLAELGYK RNAKKCKEKF 180 ENVYKYHKRT KDGRSGKSEG KTYRFFDQLE ALENNPIIHS PALPQKSALQ ATPVSMVKTT 240 ASLPSPPIIT TMPLPQQQLV VASSGTNTTS APPISIATVP SIAPATISMP QIQPNNSNNN 300 NSNNNNNNPV YFPPPPPPPA SSFPSIPAEL LSNSSSSSTS SEETIEGGSR RNKRKRRWKE 360 FFEKLMKEVI EKQEDLQKRF LEAIEKREKE RSAREEAWRV QELQRINKER EILAQERSIA 420 AAKDQAVMTF LHKIADQQNL PTPPFNNVSQ PSPPPPPPPP PPPPPQQTQP TPPVVVPPLP 480 TPPRPPPPPS MEMVKVVDNN NNNIGENNNN NNNNNSSPLA ASSSRWPKAE VEALINLRTS 540 LDAKYQENGP KGPLWEEISA LMKKHGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPQDSK 600 TCPYFHQLDA LYRERNSSKQ DAAPAIVTTT PLMVRPEQQW PPQTEQPSSQ PREVTMEDAR 660 KGGNEEDEDE EKDNIGDEDE DEDDDDDDEG GSNFEIVASK PVSAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 177 | KRNAKKCKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.9K8N0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025657035.1 | 0.0 | trihelix transcription factor GT-2 | ||||
TrEMBL | A0A445CYI4 | 0.0 | A0A445CYI4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G28250.2 | 1e-178 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-53 | Trihelix family protein |