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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.9BR1Z | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 23158.8 Da PI: 5.0496 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.5 | 8.5e-26 | 4 | 116 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGf F+Ptdeel+ ++L +++ ++ +i+++d +++P + ++ ++ yfF+++ k +nr+t++gyWk+ g +++++s+ + Araip.9BR1Z 4 LPPGFCFSPTDEELILHFLYSRISLPFHPS--IIPDLDPSQLHPCKAF----SSGNQHYFFTNKVK-------ENRSTENGYWKEIGLSEPIISAdAN 88 79*********************9877666..8***********9984....3568999**98765.......689*****************99777 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk +vf ++g++t+Wvm+ey++ Araip.9BR1Z 89 KKLGIKKYFVFN---LNEGTETNWVMQEYHI 116 88*********8...788999********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-32 | 2 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.864 | 4 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-20 | 5 | 116 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTNLPPGFCF SPTDEELILH FLYSRISLPF HPSIIPDLDP SQLHPCKAFS SGNQHYFFTN 60 KVKENRSTEN GYWKEIGLSE PIISADANKK LGIKKYFVFN LNEGTETNWV MQEYHISSSM 120 FHNPISCYAN GTAHRRLLKP DQNQNNKWVL CRVYEKNKSQ SQQGATANSY YSDEDDCGSE 180 LSYLDEVYLS LDDDLEVISP PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-20 | 3 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-20 | 3 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-20 | 3 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-20 | 3 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-20 | 3 | 162 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-20 | 3 | 162 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.9BR1Z |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193530.1 | 1e-149 | NAC domain-containing protein 104-like | ||||
Refseq | XP_025637726.1 | 1e-149 | NAC domain-containing protein 104-like | ||||
TrEMBL | A0A444ZXX9 | 1e-147 | A0A444ZXX9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G32590.2 | 9e-82 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-50 | xylem NAC domain 1 |