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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.97C7E | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28477.6 Da PI: 6.6757 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.6e-13 | 68 | 114 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+++P a K++Ka+ L ++++++k+L Araip.97C7E 68 KNHSEAERRRRARINAHLDTLRTVIPAA-----NKMDKASLLAEVIRHLKEL 114 58*************************8.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.859 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-13 | 67 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-11 | 68 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-14 | 69 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-12 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.33E-4 | 78 | 117 | No hit | No description |
PROSITE profile | PS51671 | 9.063 | 151 | 236 | IPR002912 | ACT domain |
SuperFamily | SSF55021 | 1.65E-5 | 153 | 230 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 5.2E-6 | 153 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
EIPFCLVWFW DMEMEGFAAS SERSSGVGGG YASSSSLVLD RVKGELVEAP VKLERKGVFP 60 ERTIEALKNH SEAERRRRAR INAHLDTLRT VIPAANKMDK ASLLAEVIRH LKELKTKAAQ 120 ACQGLMIPKD NDELRVEEQE GGLNGFPYSI RASLCCEYKP GLLSDIRQAL DALHLMIISA 180 EIATLGGRMK NVFVIISCEE QSFEDAEYRQ FLAGSVHQAL RSVLDRFSVS QDILESRKRR 240 RISIFSSSSL EDFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 240 | RKRRR |
2 | 237 | 241 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.97C7E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016182686.1 | 1e-174 | transcription factor bHLH30 | ||||
Refseq | XP_025631925.1 | 1e-174 | transcription factor bHLH30 | ||||
TrEMBL | A0A445BXN2 | 0.0 | A0A445BXN2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G14400.1 | 1e-134 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10685 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-30 | bHLH family protein |