PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.96KYW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 523aa    MW: 59884.9 Da    PI: 9.1184
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.96KYWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.21.2e-1761147191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+ +p
  Araip.96KYW  61 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TKKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPYCP 147
                  6***************998776..8889*************998877...999***************998879**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1561147IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186310346IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4312343IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4321348IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPVYL QFMALKPLSI VDDELVPKVG MTFTTLEDAG  60
KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTKKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHPYCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH  180
IWVPIYLDHH FWAGMRSTQR SESMHSFFNK YITRNNSLIQ FVKQYDNCLG SREQAERESD  240
AADFHTVIRC ATKSSIEAQF QDAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYDVGE  300
QVSSSIFNKF VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS  360
KKVKRRHTHI KSIHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTVIL HRAYDNVMAE  420
MESLKAKRKG TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT  480
KVLSEINLFD AASAVHSNSS QYQGYVMNYQ FRVPAAGDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.96KYW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444X8170.0A0A444X817_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-35far-red elongated hypocotyls 3