PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.92VXE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 613aa    MW: 69999.5 Da    PI: 9.3217
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.92VXEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.11.2e-1251126180
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtk 80 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k
  Araip.92VXE  51 KFYKNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISK 126
                  6***************998776..8889*************998877...8999**************9888799999976 PP
2FAR156.11.3e-17151237191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.92VXE 151 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 237
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-1051126IPR004330FAR1 DNA binding domain
PfamPF031015.9E-15151237IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186400436IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-4402433IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4411438IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYKNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKPLSV VDDQFVPKVG MTFTTLEDAR KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL  180
ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA  240
EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH LWAGMRSTQR SESMHSFFNK  300
YITRNSSLIQ FVKQYDNCLE SREQAERESD AADFHTVILC VTKSSIEAQF QDAYTHQNFR  360
EVQAQFRGKA NCITRLTNSA LGYSVYKVGE QVSRSIFNKF VVTYDSVAAE VKCQCLLFES  420
RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI KSSHEEPLME LRSKRFDQLV  480
FRSQNICEFA SESEELTAIL HRAYDNVMAE MESLKAKRKG TFSLSHEDAN LESVNELQSP  540
PRIRTRGRPK NRLGSKLDKQ IANVTKKKKT KVLSEINLFD AASVVHSNSS QYQGHVMNYQ  600
FRVPAAGDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.92VXE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.29e-36far-red elongated hypocotyls 3