PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8W8RT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 520aa    MW: 56387.4 Da    PI: 6.285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8W8RTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09336384355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Araip.8W8RT 336 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 384
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.86E-11331388No hitNo description
SuperFamilySSF474594.84E-17331402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16334401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6336384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGDRENFEVD RDRDRVNYST SMASDWRFGV GNFANSMVDS YVTNFWDHPN SQNLGFCDIN  60
GGSSNMNVIG KDGFGYGRGS HDHRTLEMGW SHASSVLKGD NNAFLPNGPA MLPQSLSQFP  120
SDSGFIERAA RLSCFGAGNS VDMVNSFGIP QSMNLYARIG GTMQGTGDAL LGHGLRSAAL  180
GGQSHKSDPN VVEDAKDDKE MTLQDDKRSE NLPVSHDEGK QALGGSPNES DRAESSGRDD  240
SPMLECTSGE PSNKGLSSKK RKRIGLDADK DKVDGSPEQP GAAVKENSGS RQQKGEQQPT  300
PSTKGSGKNA KQGSQASDSP KEEYIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQDLV  360
PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPR MDFNIEGLLA KEILQQRAGT  420
SSAHGFPPEL SMAFPPLHPS RPGLVHSTLP SMANSSDILR RTLQPNLAHL NGGFKDPNQL  480
PEVWDDELHN VVQMTFPTSA PPSCQDLDGS APSGQTKTEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8W8RT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-35AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187110.10.0transcription factor bHLH49
RefseqXP_016187191.10.0transcription factor bHLH49
RefseqXP_025626192.10.0transcription factor bHLH49
RefseqXP_025626193.10.0transcription factor bHLH49
TrEMBLA0A445ALX00.0A0A445ALX0_ARAHY; Uncharacterized protein
STRINGGLYMA02G13860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-115bHLH family protein