PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8M056
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 342aa    MW: 38412.3 Da    PI: 6.7057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8M056genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-1188139155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r+ h  +Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Araip.8M056  88 QRMIHITVERNRRKLMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 139
                  6899**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.14E-1186143No hitNo description
SuperFamilySSF474591.31E-1586157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1286142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.05687138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-988139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-893144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALLEDHHLS SSNDFSNFVV YDTISATPFS SHGSSSTSFL VEENKVEEYG ERTTTTTRKR  60
QSGEAGQGKK KRRRKPRVCK NKEEAENQRM IHITVERNRR KLMNEHLAVL RSLMPESYVQ  120
RGDQASIVGG AIEFVKELEQ LLQCLEAQKL KLVHQGMAAQ QSNKNNNEDA SSSSNELMMM  180
MMMVMGSAPF SHFFVHPQFT WSQAPNKYAS HHNKTNNNNN NQAAMADIEV TLIETHANLR  240
ILSRKSPKQL SKLLSGFQNL SLTILHLNVT SMDPLVLYSI SAKVEEECQL GSVDDIASAV  300
HNLLKMIEEE DSLCSLYGEV TKSTPSPLQD SLENSNTEYS LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15774RKRQSGEAGQGKKKRRRK
26873KKKRRR
36874KKKRRRK
46875KKKRRRKP
56974KKRRRK
68899RMIHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8M056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201127.10.0transcription factor bHLH71
TrEMBLA0A4P1RGY51e-126A0A4P1RGY5_LUPAN; Uncharacterized protein
STRINGXP_007156419.11e-122(Phaseolus vulgaris)
STRINGcassava4.1_012613m1e-122(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-54bHLH family protein