PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MIKC_MADS

Protein Properties

Length: 163aa MW: 18916.1 Da PI: 10.5034

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.8L1R3	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.9	6.2e-24	10	48	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i+n +nrqvt+skRrngi+KKA+ELSvLCda+v++ii Araip.8L1R3 10 LIQNPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIIT 48 699**********************************95 PP
2	K-box	44.2	8.1e-16	62	125	7	67
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRs 67 +l+++++e++ ++l+kLk+ +++L+r++R+++Ge d++++s ++L+ Le+++ +++ kiR Araip.8L1R3 62 IDLWHSHYEKMLENLKKLKDTNNKLRRQIRNRIGEgslDMDDMSSQQLRTLEEDMVSAIAKIRH 125 459******************************77779*********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-28	1	57	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.142	1	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-26	2	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-19	11	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-20	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	9.0E-10	66	125	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	7.663	69	163	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MGRGKIEIKL IQNPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIITKK FIDQYRKTLG 60 DIDLWHSHYE KMLENLKKLK DTNNKLRRQI RNRIGEGSLD MDDMSSQQLR TLEEDMVSAI 120 AKIRHCQPPS RRHSFHPHLL CARREALSAA ATLLLITVYM CSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.8L1R3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020961209.1	1e-106	floral homeotic protein DEFICIENS
Refseq	XP_029146158.1	1e-106	floral homeotic protein DEFICIENS
Swissprot	Q003J2	3e-50	TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBL	A0A445AWC0	1e-104	A0A445AWC0_ARAHY; Uncharacterized protein
STRING	GLYMA01G37470.1	1e-70	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2735	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	5e-34	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]