PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Araip.8I293

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 223aa MW: 25831.9 Da PI: 10.0622

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.8I293	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.8e-05	42	61	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C Cg+ F +++ L++H Araip.8I293 42 HVCRVCGRKFYTNEKLVNHF 61 79*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	1.5E-6	18	92	IPR029060	PIN domain-like
PROSITE profile	PS50157	9.681	42	70	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.02E-10	108	195	No hit	No description
Pfam	PF01936	1.6E-6	114	195	IPR021139	NYN domain, limkain-b1-type
Gene3D	G3DSA:3.40.50.1010	1.5E-6	127	202	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MVAYANSHTF TSVPHAVRQR RKEKELYNRL GSKGIIKRND PHVCRVCGRK FYTNEKLVNH 60 FKQLYESEQM KRVNHIASAR GNRRVKLVAK YSMKMEKYKK AARDILTPRV GYGLADELKR 120 AGFWVQSVLD KPQAADHALE SHMVDMMDHR WVECIVLVSD DYDFANVIRE AKLRCLKTIV 180 IGDTSDGVLK RIADTSFSWE EILMGNARKE AISVVENWKD VIF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.8I293

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020971347.1	1e-150	uncharacterized protein LOC107625141
Refseq	XP_025632659.1	1e-150	uncharacterized protein LOC112727205
TrEMBL	A0A445EDY6	1e-150	A0A445EDY6_ARAHY; Uncharacterized protein
STRING	AES71977	1e-125	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7500	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-103	C2H2 family protein