PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.8HK8K

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 509aa MW: 58044.7 Da PI: 9.1494

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.8HK8K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.9	5.8e-17	51	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+e k +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++ Araip.8HK8K 51 KFYRNYAKAAGFSTRVQSTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCC 136 6**************98887..8889*******99998776...8999**********998879************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-14	51	136	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.174	296	332	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	298	329	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	307	334	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MDDSTSDCQL NPGEVDYKFE SNEVSEPLSV VDDQLVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSTRVQSTN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCLSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH 180 FWAGIRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC 240 ATKSSIEALY THQKFREVQA QFRGKANCIT ILTNSALGYS VYEVGKQVSS SIFNKFVVTY 300 DSVAAEVKCQ CLLFESRGIL CRHALSVLSF ERVSQVSPRY ILERWSKKVK RRHTHIKSSH 360 DEPLLEPRSK RFDQLVFRSQ NICEFASESE ELTAILHRAY NNVMAEMESL KAKRKGTSSL 420 SHEDANLESV NELQSPPRIR TRGRPKNRLG SKLYKQIANA TKKKKTKVLS EINLFDAASV 480 AHSNSSQYQG HVMNYQFRVP AAGDNSFAV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MDDSTSDCQL NPGEVDYKFE SNEVSEPLSV VDDQLVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVQSTN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCLSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGIRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSSIEALY THQKFREVQA QFRGKANCIT ILTNSALGYS VYEVGKQVSS SIFNKFVVTY  300
DSVAAEVKCQ CLLFESRGIL CRHALSVLSF ERVSQVSPRY ILERWSKKVK RRHTHIKSSH  360
DEPLLEPRSK RFDQLVFRSQ NICEFASESE ELTAILHRAY NNVMAEMESL KAKRKGTSSL  420
SHEDANLESV NELQSPPRIR TRGRPKNRLG SKLYKQIANA TKKKKTKVLS EINLFDAASV  480
AHSNSSQYQG HVMNYQFRVP AAGDNSFAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.8HK8K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-32	far-red elongated hypocotyls 3