PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.8E8UZ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 504aa MW: 57201.1 Da PI: 6.6377

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.8E8UZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.8	3e-12	73	140	1	68
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkv 68 +fY +YAk GF rk+ + ng+i +r++vC+k g+r+ ++ k ++++r++ra tr++C+a+++ Araip.8E8UZ 73 EFYVKYAKCYGFASRKDLNAVD-ANGNINTRKLVCNKAGERNWKHLKmDNRQREHRAITRVNCRARIRF 140 6************9987776.9999**********9988776789999*********9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-10	73	139	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.147	181	217	IPR007527	Zinc finger, SWIM-type
PROSITE pattern	PS00028	0	365	385	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MMAKSRIKEG DQSEVLSVEY KYSSNESDDM VDVTVDEAEA DIINTDGCEK LITDLTIEDI 60 WGLVFDTESQ VCEFYVKYAK CYGFASRKDL NAVDANGNIN TRKLVCNKAG ERNWKHLKMD 120 NRQREHRAIT RVNCRARIRF ICHYRTDEIE AAGALNVTEC LNSGDIVEYN TSEYFNQQWE 180 FKVSYNKDKD LFAYECRLFE TRGLPCSHIF GVLKHRNAKC VSTSLILKRW TRNAKSDFIC 240 SIGEQDTADN IVPTLRCGAM ASICWKLCDI SSKNSANYRE DSVVLPYQPY GGVLPIPFHP 300 VPNGMAYFNQ YPSTAGITSY PQFSHVSCPS ILKLSLRLQV LSLCCAGSKA INDPKGHESH 360 GVHLCHKCRW PFPNPHPSAK HRRAHKKICG TIEGPEVLNI GNKEKDDSEI GDKINRSEDE 420 AWRLWCEERP LELIDESLTD SVAVAESEVL RCIHIGLLCV QERPENRPDM SAIVLMLNGE 480 KPLPRPRDLL FIHISLAFHQ GIVQ

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MMAKSRIKEG DQSEVLSVEY KYSSNESDDM VDVTVDEAEA DIINTDGCEK LITDLTIEDI  60
WGLVFDTESQ VCEFYVKYAK CYGFASRKDL NAVDANGNIN TRKLVCNKAG ERNWKHLKMD  120
NRQREHRAIT RVNCRARIRF ICHYRTDEIE AAGALNVTEC LNSGDIVEYN TSEYFNQQWE  180
FKVSYNKDKD LFAYECRLFE TRGLPCSHIF GVLKHRNAKC VSTSLILKRW TRNAKSDFIC  240
SIGEQDTADN IVPTLRCGAM ASICWKLCDI SSKNSANYRE DSVVLPYQPY GGVLPIPFHP  300
VPNGMAYFNQ YPSTAGITSY PQFSHVSCPS ILKLSLRLQV LSLCCAGSKA INDPKGHESH  360
GVHLCHKCRW PFPNPHPSAK HRRAHKKICG TIEGPEVLNI GNKEKDDSEI GDKINRSEDE  420
AWRLWCEERP LELIDESLTD SVAVAESEVL RCIHIGLLCV QERPENRPDM SAIVLMLNGE  480
KPLPRPRDLL FIHISLAFHQ GIVQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.8E8UZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A445ENW2	1e-143	A0A445ENW2_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15352	2	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-08	FAR1-related sequence 5