PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.87MIE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 256aa    MW: 29475.6 Da    PI: 4.573
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.87MIEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.5e-204396356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k++++++eq+e Le+ F++++++  e++++LAk+lgL+ rqV +WFqNrRa++k
  Araip.87MIE 43 KKRRLSAEQVEFLEKSFKEENKLEPERKTKLAKELGLQPRQVAIWFQNRRARWK 96
                 56689************************************************9 PP
2HD-ZIP_I/II130.66.2e-4242134193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls+eqv++LE+sF+ee+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++d+lk++ ++L ke+++L++e+++
  Araip.87MIE  42 EKKRRLSAEQVEFLEKSFKEENKLEPERKTKLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDSLQATFDTLKANYDNLLKEKDRLKAEVAR 134
                  69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1933100IPR009057Homeodomain-like
PROSITE profilePS5007118.1883898IPR001356Homeobox domain
SMARTSM003893.5E-1941102IPR001356Homeobox domain
CDDcd000864.45E-184399No hitNo description
PfamPF000465.9E-174396IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-2144106IPR009057Homeodomain-like
PRINTSPR000314.8E-66978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000314.8E-67894IPR000047Helix-turn-helix motif
PfamPF021833.6E-1798139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVSFEDVPGG KGCKNGSFFR TYDPAEEDGE ESMEEYLTQP AEKKRRLSAE QVEFLEKSFK  60
EENKLEPERK TKLAKELGLQ PRQVAIWFQN RRARWKTKQL EKDYDSLQAT FDTLKANYDN  120
LLKEKDRLKA EVARLTEKVV AMEKEGEDKS ERKGMQEATA AAVSSEGEGS KISVKSDMLD  180
SDDNINSPYY HTTSGMFEAD QSDLSQDEEE NLISRSLLHP YLIFPKLEHV EYSDPPETSC  240
NFGFAHEDHA IWSWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.87MIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192695.10.0homeobox-leucine zipper protein HAT5
RefseqXP_025629253.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022832e-45HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A445B0230.0A0A445B023_ARAHY; Uncharacterized protein
STRINGGLYMA06G20230.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-48homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]