PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8505Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 374aa    MW: 41791.3 Da    PI: 4.6218
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8505ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1894147356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Araip.8505Z  94 KKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 147
                  456899***********************************************9 PP
2HD-ZIP_I/II1309.2e-4293184192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrls eqvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y+alk + e+L++++++L++e+k
  Araip.8505Z  93 EKKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNFEKLQQDNQALHKEIK 184
                  69**************************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1977151IPR009057Homeodomain-like
PROSITE profilePS5007117.37889149IPR001356Homeobox domain
SMARTSM003892.7E-1892153IPR001356Homeobox domain
CDDcd000861.77E-1694150No hitNo description
PfamPF000468.4E-1694147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-2096156IPR009057Homeodomain-like
PRINTSPR000311.2E-5120129IPR000047Helix-turn-helix motif
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5129145IPR000047Helix-turn-helix motif
PfamPF021831.5E-17149191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKRLSSSDDS LGALMTICPS STTDRSIAYR VLVLLSCQKH SNTVTLTMLS RICIDIEEHS  60
PRNKQQVYGR EFQSMLDGLD EDGCIEESGH HGEKKRRLSV EQVKALEKNF EVENKLEPDR  120
KVKLAQELGL QPRQVAVWFQ NRRARWKTKQ LERDYGVLKA NYEALKLNFE KLQQDNQALH  180
KEIKGLKSRM QDERTESDAS VKKEQVEMIT TLQDSEENPC DLETAAAIAG SDSNKDLSYD  240
CFNNNSKGDG EGGDGVGGAA SISLFPCGDL KDGSSDSDSS AILNEENNNS SCSPMNNAAI  300
SSCGGGVLQS SNLLMSQHDE SPSSMSCFQF QKAYQATQYV KMEEHNFFSA DETCNFFSDE  360
QAPTLQWYCS EEWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8505Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190695.10.0homeobox-leucine zipper protein ATHB-6 isoform X1
RefseqXP_025639419.10.0homeobox-leucine zipper protein ATHB-6 isoform X1
TrEMBLA0A445DMZ10.0A0A445DMZ1_ARAHY; Uncharacterized protein
STRINGXP_004504111.11e-128(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.17e-69homeobox protein 6