PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.818VB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 639aa MW: 72804.6 Da PI: 6.0135 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 89.8 | 2.9e-28 | 48 | 149 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm................rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rW++qe+laL+++r++m++ +r+++lk+plWeevs++ e g++rs+k+Ckek+en+ k++k++ke+++++++++ +t+++f Araip.818VB 48 RWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRYTlytslsffislyirklGELGYHRSAKKCKEKFENVYKYHKRTKENRSGKSEGKIKTYKFF 145 8************************************************************************************************* PP trihelix 83 dqle 86 dql+ Araip.818VB 146 DQLQ 149 **98 PP | |||||||
2 | trihelix | 104.4 | 8.5e-33 | 428 | 513 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++me +++++ k+plWe++s+ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r e+s+tcpyf++l+a Araip.818VB 428 RWPKAEVHALIRLRTSMEPKYQENGPKAPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESKKQR-REDSKTCPYFHELDA 513 8********************************************************************98.78999********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.8 | 45 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.4E-15 | 47 | 151 | No hit | No description |
CDD | cd12203 | 5.68E-19 | 47 | 128 | No hit | No description |
PROSITE profile | PS50090 | 5.645 | 47 | 121 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.02 | 425 | 487 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 8.9E-23 | 427 | 514 | No hit | No description |
PROSITE profile | PS50090 | 7.085 | 427 | 485 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.83E-26 | 428 | 492 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 639 aa Download sequence Send to blast |
MQLGDPTVLE TSTGAAAEGG AEAIGSEISI KEGGGDEGEK MNFGGGNRWP RQETLALLKI 60 RSDMDSVFRD SSLKGPLWEE VSRYTLYTSL SFFISLYIRK LGELGYHRSA KKCKEKFENV 120 YKYHKRTKEN RSGKSEGKIK TYKFFDQLQA LENHQFTLSY NPTPKPQPPP TLPTNTLPLL 180 PTRPSDATTT TTTVPSTNPT PPPTTTTTVV TNPNPSSQEN NNNINNTDSR VQHSLPIMNN 240 LFSSTSTSSS TASDEDLEEK YRNKRKWKEY FRRLTRQVLA KQEEMQKRFL EAIDKREREQ 300 VAQQDAWRMQ EMTRINREHD ILVQERSTAA AKDAAVIAFL QKLSGQQQTP PPPPPPQPPI 360 TVSFGANFFQ QPTPTPTPTP TPVQVQPPPH PHPQPQPQPQ PQPQKQLQPA ALTNGDSPGP 420 LSSPSSSRWP KAEVHALIRL RTSMEPKYQE NGPKAPLWED ISAGMQRLGY NRSAKRCKEK 480 WENINKYFKK VKESKKQRRE DSKTCPYFHE LDALYREKSK GQNTNTFSFH ITNKTNEMMM 540 EPLMVQPEQQ WRPPPQYQQQ QQQQDKDVDK SNNNNNACHE DDESRKRERE YDHEEEEEDD 600 DDDEVVDDDD DGDGDSVEDE GGNRYEIATN KLSSVDAVE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.818VB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016176228.1 | 0.0 | trihelix transcription factor GT-2 isoform X1 | ||||
Refseq | XP_020966450.1 | 0.0 | trihelix transcription factor GT-2 isoform X1 | ||||
TrEMBL | A0A445BDH6 | 0.0 | A0A445BDH6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G28240.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 4e-46 | Trihelix family protein |