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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.7U3HG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | E2F/DP | ||||||||
Protein Properties | Length: 323aa MW: 35701.8 Da PI: 5.04 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 76.8 | 2.1e-24 | 80 | 153 | 14 | 71 |
E2F_TDP 14 lklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Araip.7U3HG 80 KRVCEKVESkGRTTYNEVADELVAEfadpsnsvlapdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 153 479***9999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 3.4E-110 | 6 | 323 | IPR015648 | Transcription factor DP |
SMART | SM01372 | 6.2E-27 | 66 | 153 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.4E-39 | 80 | 159 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.3E-21 | 80 | 153 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.29E-18 | 80 | 154 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 8.98E-41 | 158 | 261 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 5.2E-68 | 160 | 321 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 2.12E-42 | 160 | 277 | No hit | No description |
Pfam | PF08781 | 3.8E-41 | 161 | 273 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGTQPEQPCP EEDDEEMLGH GATISSQSMS TSRSVGSPSS RSEQTMATPA SDSTFLRLNH 60 LDIHGDDAGS QGAVASKKKK RVCEKVESKG RTTYNEVADE LVAEFADPSN SVLAPDQQQY 120 DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSQS DIEELKTERL GIRNRIEKKA 180 AYLQELEEQY VGLQNLIKRN EQVCSSGNAP SGGVSLPFIL VQTRPHATVE VEISEDMQLV 240 HFDFNSTPFE LHDDNYVLKA MKFSERPQND NNVTPNVTDG GEGSSMSGLF HVQAPTTVSN 300 PPVRPPSSPP LPGILKARVK PEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-27 | 81 | 158 | 18 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.7U3HG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016187982.1 | 0.0 | transcription factor-like protein DPB | ||||
Refseq | XP_025642933.1 | 0.0 | transcription factor-like protein DPB | ||||
Refseq | XP_025642934.1 | 0.0 | transcription factor-like protein DPB | ||||
Refseq | XP_025642936.1 | 0.0 | transcription factor-like protein DPB | ||||
Refseq | XP_025642937.1 | 0.0 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-138 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A445A709 | 0.0 | A0A445A709_ARAHY; Uncharacterized protein | ||||
STRING | XP_004505604.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.2 | 1e-131 | Transcription factor DP |