PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.7P7D7

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 274aa MW: 30196.5 Da PI: 8.0056

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.7P7D7	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.6	4.2e-38	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++C++apyfpa++p++f++vh++FGasnv k+l++lp+++re+a++sl++eAear+ dPvyG++ + lq++l+q +a la +k Araip.7P7D7 7 PCAACKFLRRKCTPECIFAPYFPANNPQRFECVHRVFGASNVGKILNELPPSQREEAVESLAFEAEARQCDPVYGCTLQVCILQKKLRQRRALLANAK 104 7******************************************************************************************9999888 PP DUF260 99 ee 100 +e Araip.7P7D7 105 RE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.303	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-37	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSSTTTPCAA CKFLRRKCTP ECIFAPYFPA NNPQRFECVH RVFGASNVGK ILNELPPSQR 60 EEAVESLAFE AEARQCDPVY GCTLQVCILQ KKLRQRRALL ANAKRELSAY INPQAIQGPF 120 NPQEKPLSSP ADHLGPPCSP NVVQYSPILG PSYGLDVVQS SAHLGLSDCP DDAPFFMPAI 180 QHNGSLGGGG AADPKLDPGQ QELLEAQQLA AAAAIREQQQ AIMMRNYVQQ QQQEYLRHNA 240 AAGIEPVAAA AALRRCQWMW SVWPHGCIFR WSRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	7	110	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	7	110	11	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.7P7D7

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016170744.1	0.0	protein LATERAL ORGAN BOUNDARIES isoform X2
Refseq	XP_016170745.1	0.0	protein LATERAL ORGAN BOUNDARIES isoform X2
Refseq	XP_020965344.1	0.0	protein LATERAL ORGAN BOUNDARIES isoform X2
Refseq	XP_020965345.1	0.0	protein LATERAL ORGAN BOUNDARIES isoform X2
Refseq	XP_020965346.1	0.0	protein LATERAL ORGAN BOUNDARIES isoform X2
Refseq	XP_020965347.1	0.0	protein LATERAL ORGAN BOUNDARIES isoform X2
Refseq	XP_025670468.1	0.0	protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A445EXF9	1e-136	A0A445EXF9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF29057	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-40	ASYMMETRIC LEAVES 2-like 1