PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.7E330

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 540aa MW: 61838.6 Da PI: 9.2595

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.7E330	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.6e-18	110	196	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+ +++++ +++i+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.7E330 110 KFYRNYAKAAGFSTRVWSTNRK--ENKIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 196 6*************998877..6669*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-15	110	196	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
LLVLLLAKLP LVSSIVLFPS FLTRFFFVIY VSSSLCNSSF VFYLIFCFLK SKFELVLKIM 60 DDSTSDCQLN PGEVDYEFES NEVPEPLSVV NDQFVPKVGM TFTTLEDAGK FYRNYAKAAG 120 FSTRVWSTNR KENKIKNQLI TCSREGKWKS KISPTEKTNP TAGLNCPARI YIHTLKDVGA 180 WIISKVVLDH SHPCCPSKAE MLKQHRELSM SIRRTIENNE EAGMRSTQRS ESMHSFFNKF 240 ITRNSSLIQF VKQYDNCLGS REQAERESDA ADFYTVIPCA TKSSIEAQFQ DVYTHQKFRE 300 VQAQFRGKAN CITRLTNSAL SYSVYEFVVT YDSVAAEVKF QCLLFESRGI LCRHALSVLS 360 FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLMEPRS KRFDQLVFRS QNICEFASES 420 EELTVILHRT YDNVMAEMES LKAKRKGTSS LSHEDANLES VNELQSPPRI RTRGRPKNRL 480 GSKLDKQITN ATKKKKMNVL SEINLFDTAS VVHSNSSQYQ GHVMNYQFRV PTVGDNSLAV

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

LLVLLLAKLP LVSSIVLFPS FLTRFFFVIY VSSSLCNSSF VFYLIFCFLK SKFELVLKIM  60
DDSTSDCQLN PGEVDYEFES NEVPEPLSVV NDQFVPKVGM TFTTLEDAGK FYRNYAKAAG  120
FSTRVWSTNR KENKIKNQLI TCSREGKWKS KISPTEKTNP TAGLNCPARI YIHTLKDVGA  180
WIISKVVLDH SHPCCPSKAE MLKQHRELSM SIRRTIENNE EAGMRSTQRS ESMHSFFNKF  240
ITRNSSLIQF VKQYDNCLGS REQAERESDA ADFYTVIPCA TKSSIEAQFQ DVYTHQKFRE  300
VQAQFRGKAN CITRLTNSAL SYSVYEFVVT YDSVAAEVKF QCLLFESRGI LCRHALSVLS  360
FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLMEPRS KRFDQLVFRS QNICEFASES  420
EELTVILHRT YDNVMAEMES LKAKRKGTSS LSHEDANLES VNELQSPPRI RTRGRPKNRL  480
GSKLDKQITN ATKKKKMNVL SEINLFDTAS VVHSNSSQYQ GHVMNYQFRV PTVGDNSLAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.7E330

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-27	far-red elongated hypocotyls 3