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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Araip.78XNL |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 486aa MW: 55174.4 Da PI: 10.0044 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Araip.78XNL | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 66.8 | 2.2e-21 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
k+ +n+sn qvtfskRr g++ KA+EL++LC+aeva+i+fs+ +k++ +
Araip.78XNL 16 KKMSNESNLQVTFSKRRGGLFNKASELCTLCGAEVAIIVFSPGQKVFSF 64
5689*****************************************9987 PP
|
| 2 | SRF-TF | 61.8 | 7.8e-20 | 270 | 317 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+i ks qvtfskRr g++KKA+EL++LC++e+ +++fs+ +k + +
Araip.78XNL 270 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEITIVVFSPADKAFSF 317
57789999*********************************9886655 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 6.8E-31 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 24.193 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 8.16E-34 | 9 | 77 | No hit | No description |
| SuperFamily | SSF55455 | 2.35E-27 | 9 | 90 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-18 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.3E-23 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-18 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-18 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 22.918 | 261 | 321 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 6.0E-28 | 261 | 320 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.88E-25 | 262 | 344 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 4.49E-29 | 263 | 330 | No hit | No description |
| Pfam | PF00319 | 4.1E-22 | 270 | 317 | IPR002100 | Transcription factor, MADS-box |
| Sequence ? help Back to Top |
| Protein Sequence Length: 486 aa
Download sequence Send
to blast |
MSTARKSRGR QKIEMKKMSN ESNLQVTFSK RRGGLFNKAS ELCTLCGAEV AIIVFSPGQK 60
VFSFGHPSVQ TIIDRYLMHA SMHNSSGTMQ FIEAQRSASV CELNEQLTRI SNQLDVEKKR 120
SNELSRLQKT VMTQFWWALS IENMDKTQLN QLKAALEKLK KSVMYYAEKL HIQGIVANPP 180
QPLLGLPSSS DVVHHHQPPF PPPTTHHVPQ LFASHIRQPL MLNGENRLMH NPMFADWSML 240
HQHGFNINTG MGGFGNMGGF LGRQKIPIEK IPKKSHLQVT FSKRRSGLFK KASELCTLCG 300
VEITIVVFSP ADKAFSFGHP EVESIIDRYL VLNPPHESIS STQQLVEAHR NANVRDLNMQ 360
LTQLLNHLEM EKKRGEELDH VRKARQRQFW WESSTDDLGF HELIQLKASI EELKKNLAKH 420
VSKIIMMDQT NMDSRIIGVN SNNGLLNRYD HAFDSNKSDA AAFNVAPTLP PPNNNAYYMG 480
FRHGYL
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 9e-15 | 261 | 345 | 1 | 85 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
| Publications
? help Back to Top |
- Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
Plant Cell, 2016. 28(6): p. 1343-60
[PMID:27233529] - Figueiredo DD,Batista RA,Roszak PJ,Köhler C
Auxin production couples endosperm development to fertilization.
Nat Plants, 2015. 1: p. 15184
[PMID:27251719] - Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
Auxin production in the endosperm drives seed coat development in Arabidopsis.
Elife, 2017.
[PMID:27848912] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
Plant Signal Behav, 2017. 12(8): p. e1339000
[PMID:28613109] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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