PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.77WYN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | G2-like | ||||||||
Protein Properties | Length: 353aa MW: 39842.8 Da PI: 7.3294 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.7e-32 | 202 | 257 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v+ Lt+++vkSHLQkYRl+ Araip.77WYN 202 KQRRCWSPELHRRFVNALQQLGGAQVATPKQIRELMQVENLTNDEVKSHLQKYRLH 257 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.614 | 199 | 259 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-29 | 200 | 260 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.66E-18 | 200 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-27 | 202 | 257 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-8 | 204 | 255 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MELSLDLSLS FVPKTISMFL GDVSRSTQIS DKLAMLDDFL NRLEDEMTKI HAFKRELPLC 60 MLLVTDAITR LKEEKLRCMG MQDPQPLTTQ EPHHNNNNWM TSLQLWSTQT KSVTFFFFFS 120 LEDCSVPENP IKRRENKNRS GGGGGVALLN GNSKEVSKVP SFSLMTTTPA PELKSSSSKS 180 NSSSLFMNRV EIQAQQSQNP RKQRRCWSPE LHRRFVNALQ QLGGAQVATP KQIRELMQVE 240 NLTNDEVKSH LQKYRLHVRK FPVSSSAEHD ANNNNIDDDD EDDLWEMKKK DQCGKGNKNS 300 SSQSQSGSPQ GPLLLAGSVK GLSSMDADDE HSDCRNWKAA IHHQPPESDN HSR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.77WYN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016201759.1 | 0.0 | transcription factor HHO5 isoform X1 | ||||
Refseq | XP_025652773.1 | 0.0 | transcription factor HHO5 isoform X1 | ||||
TrEMBL | A0A444ZA52 | 0.0 | A0A444ZA52_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G39040.1 | 1e-109 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 3e-52 | G2-like family protein |