PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.74SLF

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 303aa MW: 33303.6 Da PI: 8.6383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.74SLF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.3e-05	261	280	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + s a++L +Av+YIk Lq Araip.74SLF 261 RQTSTADMLDLAVDYIKGLQ 280 4499***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.20E-4	255	284	No hit	No description
SuperFamily	SSF47459	3.79E-5	260	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-4	260	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDSNNTNSGL LRTELEKLIS SNNKNKRVVN NSSEHLKREE GNNNCNYSFG SQNHVIYQNN 60 QHYHQIHQGL AMASSCNNGF DGTLFGATNS MDSENNNDNG TQNKMGSNLV RQKSSPAGFF 120 SNYSIDNNGT TTSSRSSSGL QCTLNFSSRS SSCSKSRMPK IVESGNEGME SNCCYMPRFT 180 GDFWDASEFN SSKRGTNNGE IMFSTSNAME AQVGLTHHLS LPSSSTKIGG MEKLFQIQGS 240 APCKIRAKRG FATHPRSIAE RQTSTADMLD LAVDYIKGLQ KQVKILTDTR AKCNCSSNNQ 300 KEQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.74SLF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015937350.1	0.0	transcription factor bHLH130
Swissprot	Q66GR3	3e-32	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A444XYQ5	0.0	A0A444XYQ5_ARAHY; Uncharacterized protein
STRING	GLYMA13G27455.1	2e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	6e-27	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]