PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.73R6C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 484aa    MW: 55936.1 Da    PI: 9.6349
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.73R6CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.24.9e-1789175191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+e k +++ +    +++t++++  +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.73R6C  89 KFYRDYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTSGLNCPARIYIHTLKdVGAWIISKVVLHHSHPCCP 175
                  6****************98887..8889***********99998776...899***************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1489175IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.285312348IPR007527Zinc finger, SWIM-type
PfamPF044346.5E-5313345IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-4323350IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNKFFAYKRL RLKIDDSTSD YQLIQGEVDY EFQSNKVPET LGCRSEFFGC ILGEAWFLTW  60
CILQPLCVVD DQFVPKVGIT FTTLEDAGKF YRDYAKAAGF STRVRSTNRK GNEIKNQLIT  120
CSREEKWKSK ISPTEKTNPT SGLNCPARIY IHTLKDVGAW IISKVVLHHS HPCCPIKAEM  180
LKQHRELSMS IRRTIENNKE ADRHIWVPIY LDHHFWAGMR STQRSESMHS FFNKEQAERE  240
SNAADFHTVI LCATKSSIEA QFQDVYTHQK FREVQAQFRG KANCITRLTN SALGYSIYEV  300
GEQVSSSIFN KFVVTYDSVA VEVKCQCLLF ESRGILCRHV LSVLSFKRVS QVSPRYILER  360
WSKKVKRRHT HIKSSHDEPL LEPKSKRFDE LVFRLQNICE FVSESEELTA ILHRAYDNVM  420
VEMESLKVKR NGTSSLSHED ANLESVNEIQ SPPKIRTRGR PKNRLGSKLD KQIANATKKK  480
KMKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.73R6C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-173protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-22FAR1 family protein