![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.6Z4YF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27919.3 Da PI: 7.5026 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3e-17 | 82 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ ++Wv+e+r+p + r++lg++ t+e+Aa+a++aa ++l+g Araip.6Z4YF 82 PVYRGVRRRN-GNKWVCEVREPI----KkSRIWLGTYATPEMAARAHDAAVLALRG 132 68*****887.9******99962....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-12 | 82 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 83 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.232 | 83 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-27 | 83 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 83 | 142 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.38E-27 | 84 | 142 | No hit | No description |
PRINTS | PR00367 | 1.9E-7 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-7 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MVYIYIPLFN TLACINQVSA IVMEFENNEE SLYYYSSSSS LSSSTSSQTQ RSAISPPPSS 60 SSPSRSQKRR SGRKKFREMR HPVYRGVRRR NGNKWVCEVR EPIKKSRIWL GTYATPEMAA 120 RAHDAAVLAL RGTSATFNFP LSVPLLPLAE SSSPQHIREA ASKAAQQTSN NDITNPPVSS 180 SNMNLCVGVD DGGGSGGVGS ISSTTFFDEE AMFNMPALLD SMAEGLLITP PSMKRGAFHD 240 DDEFQTDLTL WNFD |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.6Z4YF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016167941.2 | 0.0 | dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A444Y7N9 | 0.0 | A0A444Y7N9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G19341.1 | 2e-73 | (Glycine max) | ||||
STRING | XP_007132398.1 | 2e-73 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51990.1 | 4e-42 | C-repeat-binding factor 4 |