PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 499aa MW: 52065.3 Da PI: 8.1386

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.6UE4Z	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Araip.6UE4Z 19 FVCEICNKGFQRDQNLQLHRRGH 41 89*******************88 PP
2	zf-C2H2	11.2	0.0011	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Araip.6UE4Z 95 WKCDKCSKKYAVQSDWKAHSKIC 117 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.75E-7	18	41	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	18	41	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	19	41	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.9E-5	19	41	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	19	41	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	21	41	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	60	90	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.4E-4	83	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.75E-7	90	115	No hit	No description
SMART	SM00355	150	95	115	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVKKRVY 60 VCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR 120 EYKCDCGTLF SRRDSFITHR AFCDALAEES ARSQTHSQTT QSQIGVKVSS ESDSKAVNAE 180 SSSPQATPPP PAPTPAPAPP PPPPPPVQPE APPLPATTTT TTTTQPNSVV VPLVLQTQNP 240 ELPENSPQII EEPQANTALN GSCSSSTSST SNGGTSSSVF ASLFASSTAS GNLQSQTPPA 300 FTDLVRAMGP HDHPTDLPGP SSSEPISLCL ATNHGSSIFG TGGQDRRQYA PPPQPTMSAT 360 ALLQKAAQMG AAATNASLLR GLGIVSSSAS SSPAQQDGLQ WGQQPAEPES ASVPAGLGLG 420 LSFDSGSGLK ELMMGTPSMF GPKHTTLDFL GLGMAAGGTP GGGLSALITS IGGGLDVSAA 480 AAASFGNGEF SGKDIGRST

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVKKRVY  60
VCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR  120
EYKCDCGTLF SRRDSFITHR AFCDALAEES ARSQTHSQTT QSQIGVKVSS ESDSKAVNAE  180
SSSPQATPPP PAPTPAPAPP PPPPPPVQPE APPLPATTTT TTTTQPNSVV VPLVLQTQNP  240
ELPENSPQII EEPQANTALN GSCSSSTSST SNGGTSSSVF ASLFASSTAS GNLQSQTPPA  300
FTDLVRAMGP HDHPTDLPGP SSSEPISLCL ATNHGSSIFG TGGQDRRQYA PPPQPTMSAT  360
ALLQKAAQMG AAATNASLLR GLGIVSSSAS SSPAQQDGLQ WGQQPAEPES ASVPAGLGLG  420
LSFDSGSGLK ELMMGTPSMF GPKHTTLDFL GLGMAAGGTP GGGLSALITS IGGGLDVSAA  480
AAASFGNGEF SGKDIGRST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	91	157	3	69	Zinc finger protein JACKDAW
5b3h_F	3e-35	91	157	3	69	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.6UE4Z

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-122	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025653096.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1 isoform X1
Swissprot	Q9LVQ7	1e-162	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A444Z9X7	0.0	A0A444Z9X7_ARAHY; Uncharacterized protein
STRING	GLYMA01G38290.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-97	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]