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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.6U8R9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 182aa MW: 19783.5 Da PI: 10.6945 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 28 | 3e-09 | 33 | 52 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C+ Cgt+kTplWR gp g+k Araip.6U8R9 33 CADCGTSKTPLWRGGPAGPK 52 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.394 | 27 | 50 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.6E-7 | 31 | 52 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.5E-7 | 33 | 52 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MVDSTGKGSD SDDASPNSAA AGKSPTTEQK KTCADCGTSK TPLWRGGPAG PKVTPPPTPT 60 ASPFVIYQIS SWKVLILRFL HLNVMFLQSL CNACGIRSRK KKRAILGITR GTTTDDVKKG 120 KRSNTVANSN NNKFGDSFSF KKRWITMARQ RSNPAHSHRD KLGEEEQAAF LLMSLSYGSV 180 YA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.6U8R9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016197861.1 | 5e-97 | GATA transcription factor 16 | ||||
Refseq | XP_025630167.1 | 5e-97 | GATA transcription factor 16 | ||||
TrEMBL | A0A445AWJ9 | 1e-109 | A0A445AWJ9_ARAHY; Uncharacterized protein | ||||
STRING | XP_004508168.1 | 7e-45 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 1e-26 | GATA transcription factor 16 |