PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6J0KF
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 369aa    MW: 43168.5 Da    PI: 9.9258
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6J0KFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.92.5e-20147244196
                  EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  ff vl+ps+v+ + +++ +p +f +++  g+k  +s t+ + d +   W++++++++ ++r+++ +GW++F+k+n+L++gD++vF+++ + +  ++++
  Araip.6J0KF 147 FFLVLKPSYVHGNaNLVHIPSSFSRQYlnGLK--GSGTIWVSDDEDSNWSINYNFSNIRKRTTIHGGWNKFCKENKLQVGDVCVFEMMTQvNPHSFKI 242
                  8999*******9945558*********96555..667*************************************************886556666666 PP

                  EE CS
           B3  95 kv 96 
                  ++
  Araip.6J0KF 243 HI 244
                  65 PP
2B334.34.2e-112913651698
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + +pkkf++++++    +k +tl+    +sW vk+ ++++s    ++kGW +F+ + +L +gD++ Fkl++r++  ++v++f+
  Araip.6J0KF 291 VPIPKKFIRRNEIC--LGKNVTLKY-GQESWIVKV-VNGGS----FSKGWIQFATECKLVVGDICRFKLSDRKNLVFHVSIFK 365
                  569********766..666788777.779******.34444....89**********************99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.728179IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-11186IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-7176IPR003340B3 DNA binding domain
SMARTSM010190.13179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-10279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-21141245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-21143243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-18145245No hitNo description
PfamPF023622.9E-18147245IPR003340B3 DNA binding domain
SMARTSM010195.4E-10147248IPR003340B3 DNA binding domain
PROSITE profilePS5086313.972148248IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-13273366IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.038276367IPR003340B3 DNA binding domain
SMARTSM010196.8E-4285367IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-12286365IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-8290365IPR003340B3 DNA binding domain
CDDcd100172.60E-10293365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MIPKSFVRKY WEGISNPIIL KLPNNREEEV YWSQRKKNEI WLQNGWDEVV KLCHLEYEFL  60
LTFEYKERSC FELKVYDKSA SQINYHSDCG VHENNHDYIV VDDHVQREPK AKKRTNKAGI  120
RKSMLNNVRE KIEMAEALST KLKNPSFFLV LKPSYVHGNA NLVHIPSSFS RQYLNGLKGS  180
GTIWVSDDED SNWSINYNFS NIRKRTTIHG GWNKFCKENK LQVGDVCVFE MMTQVNPHSF  240
KIHIIPVTQQ PPPTPPHQFQ ESESPNRQSY NKFELRISKS KLKQFTSSVF VPIPKKFIRR  300
NEICLGKNVT LKYGQESWIV KVVNGGSFSK GWIQFATECK LVVGDICRFK LSDRKNLVFH  360
VSIFKEHRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6J0KF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020969173.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A444XAR50.0A0A444XAR5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-12B3 family protein