PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.6GF41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 733aa MW: 79907.5 Da PI: 7.4884 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.7e-09 | 413 | 450 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Araip.6GF41 413 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 450 664459******************************88 PP | |||||||
2 | BELL | 121 | 5.2e-39 | 277 | 348 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kk+kL+ +l+eV++rY+qy++q+q+vissFe++ag g+ak+YtslAlk+iS++FrcLkdai++qi Araip.6GF41 277 QRQELQMKKSKLVCMLDEVEQRYRQYHHQMQVVISSFEQAAGFGAAKSYTSLALKTISKQFRCLKDAISSQI 348 69*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-63 | 200 | 346 | IPR006563 | POX domain |
Pfam | PF07526 | 5.1E-49 | 205 | 345 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 391 | 454 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.3E-10 | 394 | 458 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.55E-13 | 394 | 455 | No hit | No description |
SuperFamily | SSF46689 | 3.76E-17 | 395 | 461 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-29 | 397 | 461 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.1E-18 | 411 | 450 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MATYFHGSNS EMQSSSPSAS ASGADGGLQT LYLMNPNYHH VPYSDAPTQN MLLLNPNHQA 60 HALNLANLSH APPPPHHQLL IHRLPNSDDN SRASLFGHHD IATATAPPTF HGFSAPRVQY 120 NLWGSVVDQP QPSPSSSSGG ADMGFRRPTQ QGLSLSLSSQ QQQQQQQQQT GTYRSLSGEV 180 EVAVAGGVGN SPSSASNGIS GVQGVLLGSK YLKAAQELLD EVMNVGNKGI SKEEFAEKVK 240 PNRESNSGVG EGSSGGGVCG GENSDAGKHV AELTTAQRQE LQMKKSKLVC MLDEVEQRYR 300 QYHHQMQVVI SSFEQAAGFG AAKSYTSLAL KTISKQFRCL KDAISSQIRA TSKTLGEDDC 360 LGAKVEGSRL RYVDHHLRQQ RALQQLGMIQ PNAWRPQRGL PERAVSILRA WLFEHFLHPY 420 PKDSDKVMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY MEEVKEQEIN NNNNNNGSER 480 SKESSKELGS ASNATTNNGA PDNNNNNNNP VLDPIKVLHQ SKQECFNNNS SPTGAGEISV 540 NSSLSTSPMG GGVGSLQSHS GFHLAGSSDM QIRSPNKARN ASEIMHNSPS SILSVDMEMK 600 HINGDHHREP NSITGYGAFS MEDIGTRFSN VTDHHHHHHH HQLGSSRFQG NNGVSLTLGL 660 PHNDNTVPIS ATQHGFLPQN MHSLGRRLEI GNNGNEFCVI NNPSSSHPGP TYESIDIQNR 720 KRFAAQLLHD FVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 400 | 458 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 400 | 458 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 400 | 457 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 400 | 457 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.6GF41 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016170518.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A444Y738 | 0.0 | A0A444Y738_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G38910.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 3e-98 | BEL1-like homeodomain 1 |