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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.67JA6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 182aa MW: 21049.2 Da PI: 8.4502 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.6 | 4.3e-18 | 35 | 115 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YA++ GFs r+ + +ksk +g i+ ++ C kegk+++ + etr++C+a l vk+ ++++ ++++ ++HnH+la Araip.67JA6 35 YYTRYATKKGFSFRMGRVTKSKIDGAIIGQEILCAKEGKEDRIHGV-------LDETRIDCQAILYVKRG-KDQYFISRFIKDHNHNLA 115 8**************************************9987766.......899*************9.99**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-15 | 35 | 115 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDLDMNHHEI RMTLNEELEP YEVMDFPSMD DAKTYYTRYA TKKGFSFRMG RVTKSKIDGA 60 IIGQEILCAK EGKEDRIHGV LDETRIDCQA ILYVKRGKDQ YFISRFIKDH NHNLATLKIH 120 RKKTKIQKCL IDVLDESGLI PNKIAPILAT ESGGVENISF IQQDVINYLS RKRQKNLEKG 180 DV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.67JA6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019429336.1 | 2e-49 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A396JW00 | 3e-54 | A0A396JW00_MEDTR; Putative transcription factor FAR family | ||||
STRING | AES62414 | 5e-56 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14634 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-29 | FAR1-related sequence 5 |