PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.62APN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14121.4 Da    PI: 10.3669
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.62APNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.51.7e-182068149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krie k n q+ ++kR+ g+lKKA+E+  LCda v +ii+ss+gk+y y
  Araip.62APN 20 KRIEYKKNCQIALTKRKDGLLKKANEIKSLCDAGVDLIIYSSSGKVYYY 68
                 79*********************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.1331272IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-181271IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-211381IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-181434IPR002100Transcription factor, MADS-box
PfamPF003198.8E-162168IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-183449IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-184970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MENGGEMIKK TKGRQKREIK RIEYKKNCQI ALTKRKDGLL KKANEIKSLC DAGVDLIIYS  60
SSGKVYYYGD SSLKTIKMTL SNKQQPQVLQ QTLKNQISLK IVANQAAVTT AAESVAPTFY  120
HDKGHN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.62APN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016164178.12e-51agamous-like MADS-box protein AGL28
RefseqXP_025664396.12e-51agamous-like MADS-box protein AGL28
SwissprotQ015405e-16AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBLA0A444Z9152e-55A0A444Z915_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1915424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-17M-type_MADS family protein