PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.620M4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 490aa    MW: 55367.2 Da    PI: 8.1464
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.620M4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.78e-181396190
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                 +fY++YA + GF vr ++ ++   +g++++r+ vC++ g+r+ee +       + + tr  C+ +++ ++++  +kw+v ++ +eH+Hel+
  Araip.620M4 13 RFYKTYAMMHGFAVRLDEVRRD-SDGSVIMRQIVCNRAGFRKEEVEG------PPTLTRSCCRVRIRARLDTkIQKWKVVSFYEEHSHELV 96
                 5****************99998.8999****************9988......999**************9989***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-141396IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.209217255IPR007527Zinc finger, SWIM-type
SuperFamilySSF577564.6E-6361392IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.488369386IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MQLPFTDEEA VYRFYKTYAM MHGFAVRLDE VRRDSDGSVI MRQIVCNRAG FRKEEVEGPP  60
TLTRSCCRVR IRARLDTKIQ KWKVVSFYEE HSHELVAPLD VSMMPEYCTF SVSDKAQAKN  120
LHDIGIRTCH ILGYLAAQKA YVRKKDTLLE FINNMETVVS HYRNNERVAE FNSKYTDPVL  180
VTSLPTLEDF AAKTFTHNMF REVRKEIEGA CAMTSSIDHV VEFDRVGGML RCECLWFENR  240
GISCMHIFAC LKHQHVEVIP ERLMCKRWTK NAKSDFMKSN VDDPSDSDKV LKCRLGVLGA  300
ECSRLMDVAC KNSSDFVEAM NVVVNTITKL QKRGENPCNG NLDDDYVVDP LVVKSKGAPK  360
KNLKFKQQRR CSNCGVTGHY NKSCPNLPGR IPKEPVDDDT EKNINSHLDI LTKRKRHDSV  420
KNQQKMEKDR NIGGGIAPTS AAKSDYTDQV KISSPSPNIP VCASTSNEES GLSSRPAESP  480
VVAPETGMAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.620M4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200215.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025653232.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AG210.0A0A445AG21_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.17e-14FAR1 family protein