PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 457aa MW: 50669.3 Da PI: 6.2409

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.60IH6	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	268	305	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Araip.60IH6 268 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 305 665559******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	5.0E-11	118	201	IPR006563	POX domain
PROSITE profile	PS50071	12.39	246	309	IPR001356	Homeobox domain
SMART	SM00389	2.5E-9	249	313	IPR001356	Homeobox domain
CDD	cd00086	1.43E-12	249	310	No hit	No description
SuperFamily	SSF46689	1.45E-17	250	317	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-28	252	315	IPR009057	Homeodomain-like
Pfam	PF05920	2.0E-17	266	305	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MYPNQAFSSG SYAEMLSGNP LLSHNYNNNG SVGAPNMVDP ACNSFVEGEQ NVHGQGLSLS 60 LGTSVPSFQY QYDGTASAAA ECMVSLSSGG FHESAKREGL YNSNNSDPCI QGSFSNGVLN 120 SHYLKAAQEL LDEIVGVRKA LLKQPGMEKQ EKFNNVIDGG SKDSDGKCNS QSLQNNVKPP 180 NELSAEERQS LLEKKTKLLT LWIRNTDSTV IRCRLWCGEQ EGIPRLRYVD QQLRQQKALQ 240 QLGVMRQAWR PQRGLPETSV SILRAWLFEH FLHPYPKDSE KIMLARQTGL TRNQVANWFI 300 NARVRLWKPM VEEMYKEEFG DSDNISCNIR SEGIVKSKRD DAQASDNKGE DDSQDNLATL 360 ADSVQQEGHF HKHASCSMDE NNNNGVYSCG SIMGCSTSPA AYDFAELGNF TSTMGGHVSL 420 ALELRNCERD GFGGMSDNDG IHKKRRNHNQ ECSTVAR

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MYPNQAFSSG SYAEMLSGNP LLSHNYNNNG SVGAPNMVDP ACNSFVEGEQ NVHGQGLSLS  60
LGTSVPSFQY QYDGTASAAA ECMVSLSSGG FHESAKREGL YNSNNSDPCI QGSFSNGVLN  120
SHYLKAAQEL LDEIVGVRKA LLKQPGMEKQ EKFNNVIDGG SKDSDGKCNS QSLQNNVKPP  180
NELSAEERQS LLEKKTKLLT LWIRNTDSTV IRCRLWCGEQ EGIPRLRYVD QQLRQQKALQ  240
QLGVMRQAWR PQRGLPETSV SILRAWLFEH FLHPYPKDSE KIMLARQTGL TRNQVANWFI  300
NARVRLWKPM VEEMYKEEFG DSDNISCNIR SEGIVKSKRD DAQASDNKGE DDSQDNLATL  360
ADSVQQEGHF HKHASCSMDE NNNNGVYSCG SIMGCSTSPA AYDFAELGNF TSTMGGHVSL  420
ALELRNCERD GFGGMSDNDG IHKKRRNHNQ ECSTVAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	4e-17	255	313	5	63	Homeobox protein Meis2
4xrm_B	4e-17	255	313	5	63	Homeobox protein Meis2
4xrs_A	3e-17	255	312	1	58	Homeobox protein Meis1
4xrs_B	3e-17	255	312	1	58	Homeobox protein Meis1
5bng_A	4e-17	255	313	1	59	Homeobox protein Meis2
5bng_B	4e-17	255	313	1	59	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.60IH6

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016167637.2	0.0	LOW QUALITY PROTEIN: BEL1-like homeodomain protein 3
Swissprot	Q9FWS9	4e-70	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	A0A445CC24	0.0	A0A445CC24_ARAHY; Uncharacterized protein
STRING	GLYMA14G07710.1	1e-152	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	8e-54	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]