PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5R38D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 155aa    MW: 18157.6 Da    PI: 8.6501
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5R38DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.31.8e-3611106195
       DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                  aCaaCk++r+kC+++ C+lapyfpa+++++f +vhk+FG+sn++kl+k+++ee+r+++++sl++eA++r+rdP++G +g ++k+ +++++ k+e+ 
  Araip.5R38D  11 ACAACKHQRKKCSENnCILAPYFPANRSREFHAVHKVFGVSNITKLVKSAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKNKNEIM 106
                  7***********9877***************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7810112IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3411106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQRNNNGMHP ACAACKHQRK KCSENNCILA PYFPANRSRE FHAVHKVFGV SNITKLVKSA  60
KEEDRRRVVD SLIWEACCRQ RDPIHGPYGE YTKVYNEYKK NKNEIMDSST TIYNAYCSNY  120
LHDLDNMMRQ EVVIPFQQHS QTYYITGFLV QTNEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1941194118LOB family transfactor Ramosa2.1
5ly0_B2e-1941194118LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5R38D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132691.12e-78hypothetical protein PHAVU_011G116500g
SwissprotQ9LNB93e-37LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A445DZT69e-99A0A445DZT6_ARAHY; Uncharacterized protein
STRINGXP_007132691.17e-78(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-36LOB domain-containing protein 2