PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.5HG5J | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 29011.3 Da PI: 9.8881 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.3 | 2.2e-12 | 97 | 174 | 11 | 89 |
FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 F v+k++s+k+ g+ ++ fvC keg r+++k++ + + +r +tr +C kl ++ k +k e++++ +eHnH+l Araip.5HG5J 97 RFGVCKKYSNKN-AVGKNLSHSFVCAKEGVRKSDKRD-SLTVIPRLKTRSNCLVKLGIRYIKgIEKCEIHDFFSEHNHHL 174 599*****9999.666699***************999.9999********************99**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.70.330 | 4.8E-7 | 1 | 52 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Pfam | PF03101 | 1.2E-7 | 98 | 174 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
IFHHFVGYRE VRLVSKESKH RCRDPLILCF VDFTNPACAA TAMSALQVDV LRCNKRLLQT 60 HFDDNDSSPS TLRLSSVALR RDVQRFYYFL ECPKYGRFGV CKKYSNKNAV GKNLSHSFVC 120 AKEGVRKSDK RDSLTVIPRL KTRSNCLVKL GIRYIKGIEK CEIHDFFSEH NHHLHLPQTI 180 HMLACQRKVS QVQAQEIELA DDSGITQRAS FELMSRQVGE RENIGYTRLD QKNYLRTKRM 240 RSMAYGEAGS F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.5HG5J |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020986514.1 | 5e-85 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025616747.1 | 1e-84 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3PRH2 | 2e-58 | A0A2K3PRH2_TRIPR; Protein FAR1-related sequence 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-13 | FAR1-related sequence 5 |