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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.59WR9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 305aa MW: 35270.2 Da PI: 8.3657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44 | 3.9e-14 | 28 | 109 | 14 | 100 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 + l ++ kf++++gg + l+ ++g +Wev+ rk++++++++kGW++F + L++g ++F+++g+s+ v++f+ks Araip.59WR9 28 QSLKISSKFTRTYGGG--LFNPMFLKPPDGTKWEVNW-TRKNDDEVWFEKGWNKFTQNYSLDDGHLILFTYHGNSQL--DVHIFDKS 109 56899********766..4445999************.5899999**************************998777..99999985 PP | |||||||
2 | B3 | 42.2 | 1.4e-13 | 229 | 302 | 24 | 99 |
HTT---..--SEEEEEETTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 24 eehggkkeesktltledesgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +e+ + e++++l+ +sW+vkl+ ++ + +l++GW+ F+++ +L gD++vF+l++ + +++v++f+k Araip.59WR9 229 KEYTDEDEKDVELK---IGEKSWKVKLRRgSN---SsncRYLGGGWSLFADQSELLPGDVCVFELINIHPLQFRVHIFKK 302 34433333333333...456*******55444...444589************************98899999****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.702 | 15 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-18 | 16 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-18 | 19 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.70E-13 | 21 | 107 | No hit | No description |
SMART | SM01019 | 8.0E-13 | 22 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-11 | 28 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-15 | 203 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-13 | 204 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.99E-10 | 208 | 301 | No hit | No description |
PROSITE profile | PS50863 | 11.406 | 208 | 303 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-9 | 208 | 303 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-11 | 229 | 302 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MASSSQWRGK AIIPVHFSAI IFKKTDLQSL KISSKFTRTY GGGLFNPMFL KPPDGTKWEV 60 NWTRKNDDEV WFEKGWNKFT QNYSLDDGHL ILFTYHGNSQ LDVHIFDKSA SEILYPGLNT 120 TPTTACDDEK NIKLDLMHND DDDDDSIEIL KPCKHKRSML VLVPQPCNKR MKDKKKVAER 180 RSSCSSLNWP KQERAQEVAM NFVSDNPFFT MFITHIHLSH YKAAVPNMKE YTDEDEKDVE 240 LKIGEKSWKV KLRRGSNSSN CRYLGGGWSL FADQSELLPG DVCVFELINI HPLQFRVHIF 300 KKQQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 174 | KRMKDKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.59WR9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020968213.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like | ||||
Refseq | XP_025677563.2 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | A0A444XUK4 | 0.0 | A0A444XUK4_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-20 | B3 family protein |