PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.599VJ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 443aa MW: 51268.2 Da PI: 9.473

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.599VJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.6	1.3e-10	51	115	1	70
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 kfY++YAk +GFs+r+++++++ ++ei+++ +Cs++ k +++ + +++t+++ +C a++ ++ Araip.599VJ 51 KFYRNYAKAAGFSTRVRSTNRK--KNEIKNQLITCSRKKKWKSKISP---TEKTNPTAGLNCPARIYIHT 115 6**************98887..6679*****9999988766...8999**********9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.7E-8	51	115	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEPLSV VNDQFVPKVR MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRSTN RKKNEIKNQL ITCSRKKKWK SKISPTEKTN PTAGLNCPAR IYIHTGCWCL 120 DHFKGCAGSF TLLLKTEILK QHRELNMSIR RTIENNEEAD RHIWVPIYLD HHFWAGMRST 180 QRSESMHSFF NKFITRNRSL IQFVKQYDNY LGSREQAERE SDAADFHTVI PCATKSSIEA 240 QFQDVYTHQK FREVQAQFRG KANCITRLTN SALGYSVYEV GEQVSSSIFN KFVVTYDSVA 300 AEVKCQYLLF ESRGILCRHA LSVLSFERVS QVSPRYILER LSKKVKRRHT QIKSSHDEPL 360 LEPRSKRFDQ LVFRSQNICE FVSESEELTA ILHPAYDNVM VEMEPLKAKR KGTSSLSHED 420 ANLKSVNELQ SPPRIRTRGR PKK

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MDDSTSDCQL NQGEVDYEFE SNEVPEPLSV VNDQFVPKVR MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRSTN RKKNEIKNQL ITCSRKKKWK SKISPTEKTN PTAGLNCPAR IYIHTGCWCL  120
DHFKGCAGSF TLLLKTEILK QHRELNMSIR RTIENNEEAD RHIWVPIYLD HHFWAGMRST  180
QRSESMHSFF NKFITRNRSL IQFVKQYDNY LGSREQAERE SDAADFHTVI PCATKSSIEA  240
QFQDVYTHQK FREVQAQFRG KANCITRLTN SALGYSVYEV GEQVSSSIFN KFVVTYDSVA  300
AEVKCQYLLF ESRGILCRHA LSVLSFERVS QVSPRYILER LSKKVKRRHT QIKSSHDEPL  360
LEPRSKRFDQ LVFRSQNICE FVSESEELTA ILHPAYDNVM VEMEPLKAKR KGTSSLSHED  420
ANLKSVNELQ SPPRIRTRGR PKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	87	RKKNEIKNQLITCSRKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.599VJ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-29	far-red elongated hypocotyls 3