PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4ML8D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 516aa    MW: 59430.3 Da    PI: 8.9651
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4ML8DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.93e-1780166191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei ++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.4ML8D  80 KFYRNYAKAAGFSTRVRSTNRK--ENEIENQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 166
                  6****************98887..7779***********99998776...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1480166IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186329365IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-5331362IPR007527Zinc finger, SWIM-type
SMARTSM005753.5E-4340367IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MFRFTRSSSR ESSPGFFDRS FPLISHSFLL LLRHLHCQLN PGEVNYEFEA NEVPEPLSVV  60
DDQLVPKVGM TFTTLEDTRK FYRNYAKAAG FSTRVRSTNR KENEIENQLI TCSREEKWKS  120
KISPTEKTNP TAGLNCPARI YIHTLKDVGA WIISKVVLDH SHPCCPSKAE MLKQHRELSM  180
SIHRTIENNE EADLYEDRHI WVPIYLDHHF WAGMRSTQRS ESMHSFFNKF ITRNSSLIQF  240
VKQYDNCLGS KEQAERESDA ADFHTVIPCA TKSSIEAQFQ DAYTHQKFRE VQAQFRGKAN  300
CITRLTNSTL GYSVYEVGEQ VSNSIFNKFV VTYDSVAAEV KCQCLLFELR GILCRHALSV  360
LSFEQVSQVS PRYILERWSK KVKRRHTHIK SSHDEPLMEP RSKRFDQLVF RSQHICEFSS  420
ESEELTAILH HANLESVNEL QSPPRIRTRG RPKNRLGSKL DKQIANATKK KKTKVLSEIN  480
LFDAASVVHS NSSQYQGHVM NYQFRVPAAG DNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4ML8D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-34far-red elongated hypocotyls 3