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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.4KW8X | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 697aa MW: 75181.8 Da PI: 6.155 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.4 | 1.3e-32 | 272 | 329 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k Araip.4KW8X 272 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 329 7****************************************.***************85 PP | |||||||
2 | WRKY | 102.9 | 1.8e-32 | 488 | 546 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ Araip.4KW8X 488 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 546 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-29 | 270 | 330 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-26 | 270 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-36 | 271 | 329 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-25 | 272 | 328 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.399 | 272 | 330 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.7E-37 | 473 | 548 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-28 | 480 | 548 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.32 | 483 | 548 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 488 | 547 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-25 | 489 | 546 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MAGIDENVGV PGDWSGPSPS PRTFFSVMLG EDNVARSMSD PPPGGDGAQD GDQKLVSRGG 60 LVERMAARAG FNAPRLNTDT IRSTDLSLNS DVPSPYLTIP PGLSPTTLLD SPVFLTNSLA 120 QPSPTTGKFP FISNGNISSN APERCKDNSF DDIYASSFAF KPTTDFGSSF YQGAARKMNP 180 TTIAQQSLPG VEAPVQSEHF FQSRSADVVK SQTQNKNGLH LQPDFIESSP QQDTVGVSVE 240 HSPQLEEQAD EEGEPRGNGD SVAAGFGGAP SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP 300 NCPVKKKVER SHEGHITEII YKGAHNHPKP PPNRRSGIAS ANPPSDMQMD NPEHVERQSG 360 SDGELGWANL QKGNVAGAAN WKNDNLEVTS STSVAPEYCN QSTNSQAQNG TQFDSGDAVD 420 ASSTFSNEDD DDDRGTHGSV SLGYDGEGDE SESKRRKLES YATELSGATR AIREPRVVVQ 480 TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNAGCT VRKHVERASH DLKSVITTYE 540 GKHNHDVPAA RSSSHVNANA SGSVPGQAAP GVLQPHVHRP EPTQVPGGIG RLERPPALGA 600 FNLSGRQQLG PPHGFSFGMN QPLLPNLAMP GFGPGQAKLP VMPVHPFLAT QQQRPPNEMG 660 FMLPKGEPNV EPIPERHNLP SGSYQDLMSR MPLGPHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-36 | 272 | 549 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-36 | 272 | 549 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.4KW8X |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016204542.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_020959076.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_025657224.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_025657226.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A445CY66 | 0.0 | A0A445CY66_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G47880.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9524 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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